Presentations

Here, all presentations from authors that agreed to have them published in the NETTAB site will be made available, grouped by session. Sessions will be listed cronologically.

Tutorials

• Multi-scale data integration and virtual exploration from promoters, through networks to drug targets
  Alexander Kel, GeneXplain GmbH, Wolfenbüttel, Germany, and Biosoft.ru, Skolkovo Center of Bioinformatics, Novosibirsk, Russia
• The Taverna Workbench: Integrating and analysing biological and clinical data with computerised workflows
  Katy Wolstencroft, School of Computer Science, University of Manchester, United Kingdom

Invited Lecture 1

• Integration and analysis of multi-type high-throughput data for biomolecular knowledge discovery
  Erik Bongcam-Rudloff, Swedish University of Agricultural Sciences, and Uppsala University, Sweden

Scientific Session 1

• Using graph theory to analyze gene network coherence
  Francisco Gómez-Vela, Norberto Díaz-Díaz, Jose Antonio Lagares, Jose Antonio Sánchez and Jesús Aguilar-Ruiz
• Network-based gene-disease prioritization using PROPHNET
  Víctor Martínez, Carlos Cano and Armando Blanco

Scientific Session 2

• Rational design of organelle compartments in cells
  Claudio Angione, Giovanni Carapezza, Jole Costanza, Pietro Lio' and Giuseppe Nicosia
• Filtering with alignment free distances for high throughput DNA reads assembly
  Maria Cristina De Cola, Giovanni Felici, Daniele Santoni and Emanuel Weitschek
• A strategy to reduce technical variability and bias in RNA sequencing data
  Francesca Finotello, Enrico Lavezzo, Luisa Barzon, Paolo Mazzon, Paolo Fontana, Stefano Toppo, Barbara Di Camillo
• Applications of a generic model of genomic variations functional analysis
  Sarah N. Mapelli, Uberto Pozzoli
• The Biovel project: robust phylogenetic workflows running on the Grid
  Saverio Vicario, Bachir Balech, Giacinto Donvito, Pasquale Notarangelo, Graziano Pesole
• Ranking-aware integration and explorative search of distributed bio-data
  Marco Masseroli, Matteo Picozzi and Giorgio Ghisalberti
• Development of a text search engine for medicinal chemistry patents
  Emilie Pasche, Julien Gobeill, Fatma Oezdemir-Zaech, Therese Vachon, Christian Lovis and Patrick Ruch

Invited Lecture 2

• Semantics based biomedical knowledge search, integration and discovery
  Barend Mons, Leiden University Medical Center, and Netherlands Bioinformatics Center, The Netherlands

Scientific Session 3

• Answering Gene Ontology terms to proteomics questions by supervised macro reading in Medline
  Julien Gobeill, Emilie Pasche, Douglas Teodoro, Anne-Lise Veuthey and Patrick Ruch
• IntelliGenWiki: An Intelligent Semantic Wiki for Life Sciences
  Bahar Sateli, Marie-Jean Meurs, Gregory Butler, Justin Powlowski, Adrian Tsang and René Witte

Technological - Industrial Session

• Extracting knowledge from biomedical data through Logic Learning Machines and Rulex
  Marco Muselli
• Data modeling: the key to biological data integration
  François Rechenmann
• GeneGrid: finding disease causing variants in NGS data
  Jochen Supper, Claudia Gugenmus, Korbinian Grote and Frederic Eyber

Invited Lecture 3

• Clinical and genomic data integration in support of biomedical research and clinical practice
  Eric Neumann, PanGenX and Clinical Semantics Technologies, USA

Scientific Session 4

• ROCK: a resource for integrative breast cancer data analysis
  Marketa Zvelebil, Costas Mitsopoulos and Saif Ur-Rehman
• QTreds: a flexible LIMS for omics laboratories
  Piergiorgio Palla, Gianfranco Frau, Laura Vargiu and Patricia Rodriguez-Tomé
• The open source ISA software suite and its international user community: knowledge management of experimental data
  Alejandra Gonzalez-Beltran, Eamonn Maguire, Philippe Rocca-Serra and Susanna-Assunta Sansone

Scientific Session 5

• The ontogene system: an advanced information extraction application for biological literature
  Fabio Rinaldi
• A semantic collaborative system for the management of translational research projects
  Matteo Gabetta, Giuseppe Milani, Cristiana Larizza, Valentina Favalli, Eloisa Arbustini and Riccardo Bellazzi
• BioQuery-ASP: querying biomedical databases and ontologies using Answer Set Programming
  Esra Erdem and Umut Oztok
• DiGSNP: a web tool for Disease-Gene-SNP hierarchical prioritization
  Carmen Navarro, Carlos Cano, Armando Blanco and Fernando García

Announcement of NETTAB 2013

• Announcement of NETTAB 2013
  Nicola Cannata, University of Camerino, Italy

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