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Programme Outline
Sunday September 5th
9:00 |
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Registration (Sala
Della Muta, Piazza Cavour) |
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14:00 |
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Welcome
Prof. Fulvio Esposito
(Dean of the Faculty of
Science
and Technology)
Bioinformatics
at Unicam
Prof. Gloria Cristalli
(Coordinator of the Course in Bioinformatics)
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Opening Lecture
Chair:
Flavio Corradini
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14:15 - 15:00 |
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Modelling Biological Network
[Presentation,
36Kb] |
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Anna Ingolfsdottir
(University of Iceland, Reykjavik, Iceland, BRICS, Dept. of
Computer Science, Aalborg University) |
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| 15:00
- 16:30 |
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Session 1: Computational Biology
I
Chair: Roberto Marangoni
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Maximum Likelihood and Statistical Model Selection Methods Applied
to Protein Interaction Network Data |
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Michael P.H. Stumpf, Piers J. Ingram
(Imperial College London, UK)
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A
MultiAgent System for Protein Secondary Structure Prediction
[Presentation,
424Kb] |
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Giuliano Armano, Gianmaria Mancosu, Alessandro Orro, (Università di
Cagliari, Italy)
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Using
Secondary Structure Information to Perform Multiple Alignment
[Presentation,
244Kb] |
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Giuliano Armano, Alessandro Orro (Università di Cagliari), Luciano Milanesi (ITB-CNR, Milano Italy)
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| 16:00
- 16:30 |
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Coffee break |
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17:00 - 18:15 |
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Session 2:
Computational Biology II
Chair:
Pablo Gonzalez
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Computer-Aided DNA Base
Calling from Forward and Reverse Electropherograms
[Presentation,
528Kb] |
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Valerio Freschi, Alessandro Bogliolo (Università di Urbino, Italy)
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Random Subspace Ensembles for the Bio-molecular
Diagnosis of Tumors
[Presentation,
124Kb] |
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Alberto Bertoni, Raffaella Folgieri and Giorgio Valentini
(Università degli Studi di Milano, Italy)
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Short communication: |
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A Quest for EDC-related Genes in the Context of
Bio-medical Literature
[Presentation,
176Kb] |
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Massimo Ubaldi,
Laura Soverchia, Roberto Ciccocioppo, Gilberto Mosconi and Alberta
Maria Polzonetti (Università di Camerino, Italy)
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20:00
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Welcome
wine party |
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Monday September 6th
| 9:00 -
10:00 |
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Invited Lecture
chair: Roberto Ciccocioppo
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Microarrays Methods and Applications
[Presentation,
5,292Kb]
Gary Hardiman, (Unversity of California, USA)
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| 10:00
- 11:00 |
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Session 3: Computational
Biology III
chair: Michael P.H. Stumpf |
Satellite Event:
Workshop on theory and practice on Gene-Array technology |
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BDD-Based Algorithms in Genetic Linkage Analysis
Anna Ingolfsdottir,(University
of Iceland,
BRICS, Dept. of Computer
Science, Aalborg University)
Daniel Gudbjartsson, Gunnar Gunnarsson, Thorvaldur
Thorvaldsson, (DeCode Genetics, Reykjavik, Iceland)
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Experimental design for microarray studies.
Wolfgang
Sommer, (Neurotec, Karolinska Institute, Huddinge University
Hospital, M 57, S-14186 Stockholm, Sweden) |
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Towards Motif Detection in Networks:
Frequency Concepts and Flexible Search
[Presentation,
888Kb]
Falk Schreiber, Henning
Schwöbbermeyer (Bioinformatics Center Gatersleben-Halle, Germany) |
Sample
preparation, amplification and labeling for array analysis
Franco Martinez,
(Celbio S.p.A, Milan, Italy)
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11:00 - 11:30 |
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Coffee break |
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11:30 - 13:30 |
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Poster Session:
For the complete click here
or see below |
Satellite Event:
Workshop on theory and practice on Gene-Array technology |
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Forget limitations of the past: a complete
solution for RNA
amplification
Annamaria Guiducci,
(MWG Biotech, Srl Florence , Italy)
Ready...Set...Scan! What's inside a microarray scanner?
Nicola Bortoletto,
(Bio-Rad Laboratories srl Segrate MI, Italy)
Basic
principles in data analysis and visualization
Pasquale De Luca, (SZN-BioGeM, Naples, Italy)
THE MWG oligo-array concept: Progression is a
matter of trust
Lucilla Biagini
(MWG Biotech Srl,
Florence, Italy) |
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13:30 - 15:00 |
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Lunch
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15:00 - 16:00 |
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Discussion Panel:
Models and Metaphors from Biology to Computer
Science and Bioinformatics
Expected
participants:
as biologists,
Alfredo Colosimo
(Università di Roma "La Sapienza" Italy)
Giorgio Valle "Bioinformatics
applied to the analysis of genomes ",
(Università di Padova, Italy)
Cristina Miceli and
Maurizio Massi
[Presentation,
48Kb]
(Università di Camerino, Italy)
as computer
scientists
Luca Cardelli
(Microsoft Reseach, UK)
Pierpaolo Degano
(Università di Pisa, Italy)
Anna Inglfsdottir
(University of Iceland, Reykjavik Iceland,
BRICS, Dept. of Computer Science,
Aalborg University)
Paola Quaglia
(Università di Trento, Italy)
moderated by
Andrea Omicini and Emanuela
Merelli
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Satellite Event:
Workshop on theory and practice on Gene-Array technology
Guided discussion
on the major topics
emerged
in the morning session |
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Coffee break |
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16:00 - 16:30 |
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16:30 - 19:30 |
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Social Event:
Grotte di Frasassi
or
Guided Tour of Camerino
and
visit to the "Vitalini Castle"
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Satellite Event:
Workshop on theory and practice on Gene-Array technology
Guided discussion
on the major topics
emerged
in the morning session |
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20:00 |
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Social Dinner
(at Vitalini Castle) |
Tuesday September
7th
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9:00 - 10:00 |
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Invited
Lecture
Chair: Andrea Omicini
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Languages and Notations for Systems Biology
[Presentation,
2,868Kb]
Luca Cardelli (Microsoft Research
Cambridge, UK)
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10:00- 11:00 |
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Session 4: Systems Biology
Chair:
Piepaolo Degano
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Modelling, Simulation and Visualisation of Stem Cell Behaviour
[Presentation,
320Kb]
Mark d'Inverno and
Jane Prophet (University of Westmister, UK)
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Modeling Kohn Interaction Maps with Beta Binders: an Example
Federica Ciocchetta,
Corrado Priami, Paola Quaglia (Università di Trento, Italy) |
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11:00 - 11:30 |
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Coffee break |
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11:30 - 12:00 |
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Modeling Gene Expression
[Presentation,
304Kb]
Jasmin
Šarić, Isabel Rojas, Esther Ratsch, Renate Kania, Ulrike Wittig (EML Research gGmbH, Germany)
Aldo Gangemi (CNR, Italy)
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12:00 - 13:00 |
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Session 5:
Bioinformatics Engineering
Chair:
Anna Ingolfsdottir
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Specifying In Silico Experiments as Coordinations of
Coarse-Grained Processes
[Presentation,
76Kb]
Ane Tröger and Alvaro A. A. Fernandes
(University of Manchester, UK)
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Short
Communications: |
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Bioinformatics Engineering: A Process Methodology
Paola Inverardi,
Daniele Pavone, Pietro Recchilongo, Alessandra Tessitore
(Università di L'Aquila, Italy)
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An
Agent-oriented Conceptual Framework for Biological Systems
[Presentation,
144Kb]
Nicola Cannata
(Università di Padova),
Flavio Corradini, Emanuela Merelli
(Università di Camerino),
Andrea Omicini, Alessandro Ricci
(Università di Bologna, Italy)
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| 13:00
- 13:15 |
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Closing Remarks and Announcement of NETTAB 2005
[Presentation,
88Kb] |
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POSTERS |
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P1 |
Dave Angulo (DePaul
University)
Alex Schilling, Kevin Drew, Tim Freeman (University
of
Chicago)
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Mass
Spectra Analysis on the Illinois BioGrid |
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P2 |
Saverio Alberti, Marco Trerotola
(Università di Chieti, Italy) and Andrew Emerson (CINECA, Italy)
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On
the detection of spliced chimeric mRNAs in sequence databanks |
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P3 |
Anna Marabotti and Angelo M. Facchiano
(ISA-CNR, Italy)
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Comparative
modelling of human galactose-1-phosphate
uridylyltransferase
and of its galactosemia-related mutant Q188R: A molecular explanation
of the structural effects of the mutation
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P4 |
Susan Costantini,
Giovanni Colonna and
Angelo M. Facchiano
(Seconda Univerità di Napoli, Italy) |
Prediction of the
secondary structure of proteins:
The amino acid
propensities
in proteins belonging to different secondary structural classes
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P5 |
Jason
S. Iacovoni (INSERM, F), Allouche (INRIA, France), and
Herve Prats (INSERM, France)
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GeneHuggers
Divide and Conquer modules: parallelized sequence database mining
of complex genomes
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P6 |
Acquadro
F., Mello Grand M, Segir R, Vizzini L, Scatolini M and Chiorino G. (Bioinformatics
Pharmacogenomics Laboratory, Italy)
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Gene
Expression Profiling on a cohort of 50 early stage prostate cancer patients |
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P7 |
Arlinde
Christina,
Karolinska
Ploner,
A. and Sommer
W.
(Institutet, Stockholm, Sweden)
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Effect
of a priori filtering on microarray derived candidate gene lists with p-values adjusted for
false discovery rate.
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P8 |
Fusetti L., Maran V., Parma P.
I (LEA, Istituto, Italy ), Damin F., Chiari M. (CNR Milano), Greppi G.F.
(Università di Milano, Italy)
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Bovine
Gene Expression Profiling In Lipid Metabolism By Microarray Analysis |
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P9 |
Antonietta La Terza
(Università di Camerino), Roberto Marangoni,
Nadia Pisanti
(Università di Pisa, Italy), Sabrina Barchetta, Cristina Miceli
(Università di Camerino, Italy)
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Bioinformatic
tools to identify structured motifs in the upstream regions of stress-response-involved
genes in Tetrahymena thermophila
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P10 |
Mario Compiani (Università di
Camerino, Italy), Emidio Capriotti, Rita Casadio
(Università di Bologna, Italy)
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Computation
of the Folding Rates of wild type and mutant Proteins |
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P11 |
Ezio
Bartocci, Flavio
Corradini,
Emanuela
Merelli (Università di
Camerino, I) |
An
overview of Service Discovery for biological distributed applications |
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P12 |
Flavio
Corradini, Chiara
Ercoli,
Emanuela
Merelli, Barbara
Re (Università di Camerino,
Italy)
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A
Matchmaker for BioMoby |
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P13 |
Mauro Angeletti, Ezio Bartocci,
Arianna Baldoncini, Rosario Culmone
(Università di Camerino, Italy)
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The
interactome jigsaw puzzle: putting together the complete picture of protein-protein
interactions using the Bioagent platform
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P14 |
Domenico
Marra, Paolo
Romano (IST, Italy)
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Mutation
data interoperability: SRS implementation of the TP53 IARC mutation
database providing XML output
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P15 |
Shahlaa Kasim
(IT Department, Al-Zahra College for Women, Oman) |
On
Searching Data in Peer-to-Peer Network |
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P16 |
Bill
Andreopoulos (York University, Toronto, Canada) |
Knowledge-based
clustering of numerical data sets incorporating confidence values:
applications to yeast genomic data sets
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P17 |
Chen-Tsun Chuang,
Cheng-Chia Yang and
Mei-Fen Huang
(China Medical University, Taiwan) |
Repetitive
sequence analysis of human chromosome X |
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P18 |
Francesco
Gianfelici (Università Politecnica delle Marche, Italy) |
A Self-Organizing P2P
Network Based on Multi-Layer Structure |
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P19 |
Roberto Garello (Politecnico di
Torino, Italy), Francesco Mininni (SAISME, Torino), Franco Chiaraluce, and Ennio Gambi
(Università Politecnica delle Marche, Italy)
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Sequence
analysis based on genomic signal processing |
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P20 |
Wolfgang Sommer, Christina Arlinde
(Institutet, Stockholm, Sweden), Massimo Ubaldi
(Università di Camerino, Italy)
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Experimental design for microarray studies |
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