Programme overview
1st Session: The standardization effort
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Interoperability of data banks and software systems in the (post) Internet era,
Luca Toldo,
Merck KGaA,
Germany
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XML and the Information World,
Massimo Marchiori,
MIT/W3C,
United States, & University of Venice,
Italy
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Standardization and ontologies in biology,
Steffen Schulze-Kremer,
RZPD Deutsche Ressourcenzentrum
für Genomforschung GmbH,
Germany
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CORBA, OMG, LSR at EBI and elsewhere,
Philip Lijnzaad,
European Bioinformatics Institute,
United Kingdom
2nd Session: Implementation of standards for biology
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Report on XEWA-00: the XML Enabled Wide-Area Searches for Bioinformatics
Workshop,
Terence Critchlow,
Lawrence Livermore National Laboratories,
United States
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Towards standardisation of microarray gene expression data,
Alan Robinson,
European Bioinformatics Institute,
United Kingdom
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The BioCorba specification and its implementation in java, perl and python,
Matthew Pocock,
The Sanger Centre,
United Kingdom
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AppLab and the development of network applications in biology,
Martin Senger,
European Bioinformatics Institute,
United Kingdom
3rd Session: Integration systems
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Integration of SRS with the Object Management Architecture and
biology oriented extensible markup languages,
Thure Etzold,
Lion Biosciences Ltd,
United Kingdom
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The TAMBIS project and its integration in the bioinformatics
network environment,
Carole Goble,
Department of Computer Science,
University of Manchester, United Kingdom
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The electronical infrastructure for the analysis of metabolic networks,
Ralf Hofestaedt,
School of Computer Science,
University of Magdeburg, Germany
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The InterPro database, an integrated documentation resource for
protein families, domains and functional sites,
Rolf Apweiler,
European Bioinformatics Institute,
United Kingdom
4th Session: Oral communications
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Prophecy XML: Applications of XML in Bioinformatics Data Production,
Edward Kiruluta,
DoubleTwist Inc.,
United States
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Distributed framework for gene analysis,
Luciano Milanesi,
Istituto Tecnologie Biomediche
Avanzate CNR, Italy
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Application of XML to protein structure data and limitations which
have led to development of a new format,
Andrew C.R. Martin,
University of Reading,
United Kingdom
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MaXML: Functional Annotation of Mouse cDNA Sequences in XML,
Takeya Kasukawa,
NTT Software Corporation,
Japan
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Building a Distributed Annotation System,
Thomas Down,
The Sanger Centre,
United Kingdom
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An intelligent agents architecture for DNA-microarray data integration,
Emanuela Merelli,
Mathematics and physics department,
University of Camerino,
Italy
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An Ontology Driven Architecture for Macromolecular Structure,
Douglas S. Greer,
San Diego Supercomputer Center,
University of California, USA
Round table: Towards a bioinformatics integrated network environment
All invited speakers will face this visionary issue during a
public debate, open to all interested people.
Posters' Session
This session is devoted to the presentation of contributed
posters on the Workshop's topics.
The list of posters is now available.
Software Demo Session
This session is devoted to on-line demonstrations of clients/servers
applications.
A list of softwares under demonstration will soon be available.
Companies' Session
This session is devoted to the presentation of proprietary integration
softwares from companies.
The list of companies that will present their softwares will soon
be available.
Programme outline
Thursday, May 17th, 2000
9,00 - 10,20 |
Registration and installation of posters |
10,20 - 10,30 |
Welcome and introduction to the workshop |
10,30 - 12,30 |
1st Session The standardization effort |
12,30 - 14,00 |
Lunch |
14,00 - 16,00 |
2nd Session Implementation of
standards for biology |
16,00 - 16,15 |
Coffee break |
16,15 - 17,15 |
Posters' session |
17,15 - 19,15 |
3rd Session Integration systems |
20,30 |
Social dinner |
Friday, May 18th, 2000
9,00 - 11,00 |
4th Session Oral communications |
11,00 - 11,15 |
Coffee break |
11,15 - 12,45 |
Round table with all invited speakers
Towards a bioinformatics integrated network environment |
12,45 - 14,00 |
Lunch |
14,00 - 15,00 |
Companies' Session Selected contributions
from IT companies |
15,00 - 16,30 |
Software Demo Session Short on-line
presentations of clients/servers applications |
16,30 |
Workshop closure |
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