Video recording of Scientific Sessions

Here we provide the link to videos of keynote lectures given by leading experts in the field, oral communications from selected contributions, open discussions,and tutorials, under respective dates.

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Wednesday, November 14, 2012

TUTORIALS

• Multi-scale data integration and virtual exploration from promoters, through networks to drug targets
  Alexander Kel
• The Taverna Workbench: Integrating and analysing biological and clinical data with computerised workflows
  Katy Wolstencroft

OPENING SESSION

• Welcome and introduction
  Marco Masseroli
• Integration and analysis of multi-type high-throughput data for biomolecular knowledge discovery
  Erik Bongam-Rudloff (KEYNOTE)

SCIENTIFIC SESSION 1

• Using graph theory to analyze gene network coherence
  Francisco Gómez-Vela
• Network-based gene-disease prioritization using PROPHNET
  Víctor Martínez

SCIENTIFIC SESSION 2

• Rational design of organelle compartments in cells
  Claudio Angione
• Filtering with alignment free distances for high throughput DNA reads assembly
  Giovanni Felici
• A strategy to reduce technical variability and bias in RNA sequencing data
  Francesca Finotello
• Applications of a generic model of genomic variations functional analysis
  Uberto Pozzoli
• The Biovel project: robust phylogenetic workflows running on the Grid
  Bachir Balech
• Ranking-aware integration and explorative search of distributed bio-data
  Marco Masseroli
• Development of a text search engine for medicinal chemistry patents
  Patrick Ruch

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Thursday, November 15, 2012

KEYNOTE

• Semantics based biomedical knowledge search, integration and discovery
  Barend Mons

SCIENTIFIC SESSION 3

• Answering Gene Ontology terms to proteomics questions by supervised macro reading in Medline
  Patrick Ruch
• IntelliGenWiki: An Intelligent Semantic Wiki for Life Sciences
  Bahar Sateli

TECHNOLOGICAL-INDUSTRIAL SESSION

• Extracting knowledge from biomedical data through Logic Learning Machines and Rulex
  Marco Muselli
• Data modeling: the key to biological data integration
  François Rechenmann
• GeneGrid: finding disease causing variants in NGS data
  Claudia Gugenmus (AGREEMENT DENIED)

PANEL DISCUSSION

• Technological and methodological challenges for Integrated Bio-Search
  E. Bongcam-Rudloff, S. Ceri, A. Kel, B. Mons, E. Neumann, F. Rechenmann

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Friday, November 16, 2012

KEYNOTE

• Clinical and genomic data integration in support of biomedical research and clinical practice
  Eric Neumann

SCIENTIFIC SESSION 4

• ROCK: a resource for integrative breast cancer data analysis
  Saif Ur-Rehman
• QTreds: a flexible LIMS for omics laboratories
  Piergiorgio Palla
• The open source ISA software suite and its international user community: knowledge management of experimental data
  Alejandra Gonzalez-Beltran (AGREEMENT DENIED)

SCIENTIFIC SESSION 5

• The ontogene system: an advanced information extraction application for biological literature
  Fabio Rinaldi (AGREEMENT DENIED)
• A semantic collaborative system for the management of translational research projects
  Matteo Gabetta
• BioQuery-ASP: querying biomedical databases and ontologies using Answer Set Programming
  Esra Erdem
• DiGSNP: a web tool for Disease-Gene-SNP hierarchical prioritization
  Carmen Navarro

CLOSING SESSION

• Announcement of NETTAB 2013
  Nicola Cannata
• Best Poster Awards and Workshop closure
  Marco Masseroli and Paolo Romano

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